Open Source Linux Information Analysis Software - Page 2
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Information Analysis Software for Linux
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Kibana
Your window into the Elastic Stack
Kibana is a analytics and search dashboard for Elasticsearch that allows you to visualize Elasticsearch data and efficiently navigate the Elastic Stack. With Kibana you can visualize and shape your data simply and intuitively, share visualizations for greater collaboration, organize dashboards and visualizations, and so much more. -
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Umami
A simple, fast, website analytics alternative to Google Analytics
Umami is a simple, easy to use, self-hosted web analytics solution. The goal is to provide you with a friendlier, privacy-focused alternative to Google Analytics and a free, open-sourced alternative to paid solutions. Umami collects only the metrics you care about and everything fits on a single page. You can view a live demo here. Umami measures just the important metrics that you care about: pageviews, devices used, and where your visitors are coming from. Everything is displayed on a single, easy to browse page. Umami is able to track an unlimited number of websites from a single installation. You can even track subdomains and individual URLs. Umami is hosted by you under your own domain so you can reliably avoid ad-blockers unlike Google Analytics. The tracking script is tiny (only 2KB) and supports legacy browsers like IE. Umami can be used to host data for friends or clients. Just create a separate account and they can start tracking their own websites on their own dashboard. -
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parca
Continuous profiling for analysis of CPU and memory usage
Continuous profiling for analysis of CPU, memory usage over time, and down-to-the-line number. Saving infrastructure costs, improving performance, and increasing reliability. A single profiler, using eBPF, automatically discovers targets from Kubernetes or systemd across the entire infrastructure with very low overhead. Supports C, C++, Rust, Go, and more. Both producing pprof formatted profiles with the eBPF-based profiler and ingesting any pprof formatted profiles allowing for wide language adoption and interoperability with existing tooling. Efficiently storing profiling data while retaining raw data and allowing slicing and dicing of data through a label-based search. Aggregate profiling data infrastructure-wide, view single profiles in time or compare on any dimension. -
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Wordcorr
Data management for comparative linguistics
Wordcorr automates the tedious and risky process of tabulating and managing the sound correspondences used in working out the historical development of natural languages. Initial support was from NSF. -
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JMulTi is an interactive software designed for univariate and multivariate time series analysis. It has a Java graphical user interface that uses an external engine for statistical computations. It uses the framework JStatCom.
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picard
A set of tools for working with high-throughput sequencing data
A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team -
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Jojos Binary Diff
Binary Diff and Undiff Utility
JDIFF is a program that outputs the differences between two binary files, either in binary format or in human readable format (detailed or summarized) and then allows to reconstruct the second file from the first one and the diff-file. -
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Leaklog is a leakage control system based on Regulation (EC) No 842/2006. It logs findings and parameters of leakage checks, shows a history of the development of parameters, compares them with nominal ones and calculates the percentage of leakage.
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Th3inspector
Best Tool For Information Gathering
Th3Inspector is a Perl- and shell-based, all-in-one information-gathering toolkit built to quickly enumerate public and semi-public data about targets (domains, IPs, phone numbers, mail servers, etc.). It exposes a single command-line entrypoint (Th3inspector.pl) with many switches for common reconnaissance tasks — examples include website info, whois, MX lookup, geo-IP, subdomain discovery, CMS detection, port scanning, and Cloudflare real-IP resolution — so a user can chain many checks from one script. The project provides simple install wrappers for Linux, Android/Termux and even instructions for Windows (Perl + CPAN modules), and includes helper scripts to update or install dependencies automatically. The repository is actively packaged as versioned releases in the README (current noted version 1.9) and is distributed under an MIT license. -
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ta4j
A Java library for technical analysis
Ta4j is an open-source Java library for technical analysis. It provides the basic components for the creation, evaluation, and execution of trading strategies. Ta4j is available on Maven Central. You can also download example code from the maven central repository. The wiki is the best place to start learning about ta4j. For more detailed questions, please use the issues tracker. We can calculate indicators over this bar series, in order to forecast the direction of prices through the study of past market data. Then we have to build our trading strategy. It is made of two trading rules, one for entry, the other for exit. Ta4j comes with a set of basic trading rules/strategies which can be combined using boolean operators. Trading strategies can be easily compared according to a set of analysis criteria. Ta4j can also be used for live trading with more complicated strategies. -
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Lush is a Lisp dialect with extensions for object-oriented and array-oriented programming. Lush is intended for prototyping numerically intensive applications and is designed for easy integration of existing C/C++/Fortran codes.
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LinAsm
Collection of fast and optimized assembly libraries for x86-64 Linux
LinAsm is collection of very fast and SIMD optimized assembly written libraries for x86-64 Linux. It implements many common and widely used algorithms for array manipulations: searching, sorting, arithmetic and vector operations, unit conversions; fast mathematical and statistic functions; numbers and time converting algorithms; finite impulse response (FIR) digital filters; spectrum analysis algorithms, Fast Hartley transformation; CPU cache friendly functions and extremely fast abstract data types (ADT) such as hash tables b-trees, and much more. LinAsm libraries are written on FASM assembly language. They are stable and have appropriate benchmarks for many units. All libraries are well documented and grouped by their functionality. To get more information about this library, please visit the official web site: http://linasm.sourceforge.net -
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Advanced Normalization Tools ( ANTs )
Multidimensional image registration, segmentation and statistics
*** This is an archive only, please see https://github.com/ANTsX for this and other ANTsX tools *** Image registration with variable transformations (elastic, diffeomorphic, diffeomorphisms, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, etc). Image segmentation with priors & nonparametric, multivariate models. *** Current ANTs code, binaries (Mac, Windows, Linux) and support is hosted at Github *** https://github.com/ANTsX/ANTs Docker hub: https://hub.docker.com/u/antsx Older code and binaries remain available here on SourceForge (1.9x, pre 2014). If you are new to ANTs you should probably go to Github and get the latest code. -
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asammdf
Fast Python reader and editor for ASAM MDF / MF4 (Measurement Format)
*asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files. It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4). *asammdf* works on Python 2.7, and Python >= 3.4 -
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miRDP2
Accurately and fast analyzing microRNAs transcriptome in plants
miRDeep-P2 (miRDP2) is developed to accurately and fast analyze microRNAs (miRNAs) transcriptome in plants. It is adopted from miRDeep-P (miRDP) with new strategies and overhauled algorithm. We have tested miRDP2 to analyze miRNA transcriptomes in such plants with gradually increased genome size as Arabidopsis, rice, tomato, maize and wheat. Compared with miRDeep-P and several other computational tools, miRDP2 processed NGS data with superior speed. By incorporating newly updated plant miRNA annotation criteria, the accuracy of miRDP2 is also markedly improved. Our results demonstrate miRDP2 as a fast and accurate tool for analyzing the miRNA transcriptome in plants. Reference: https://doi.org/10.1093/bioinformatics/bty972 -
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Open source Algol 68 implementations
Implementations for the Revised Report language
This project offers open source implementations for UNESCO/IFIP's Algol 68 (the Revised Report language). The project offers two implementations: Implementation 1 is Algol68G: a recent checkout hybrid compiler/interpreter by Marcel van der Veer, supporting arbitrary arithmetic, partial parametrisation, complex numbers, POSIX threads, GNU plotutils, GNU scientific library, curses, sound, TCP sockets, RegEx and PostgreSQL. Inplementation 2 is algol68toc, a port by Sian Mountbatten of the vintage Algol68RS (UK Defense Research Agency) compiler. The implementation emits C code. -
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OSRA is a utility designed to convert graphical representations of chemical structures and reactions, as they appear in journal articles, patent documents, textbooks, trade magazines etc., into SMILES or SD file format- a computer recognizable molecular structure You can find links to the binary executables here: https://sourceforge.net/p/osra/wiki/Download/
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xlsLib
C++/C library to construct Excel .xls files in code.
A multiplatform C++ library for dynamic generation of Excel .xls files containing multiple worksheets. Unlike .csv files, these can be directly opened by Excel and thus provide an excellent way to output large data sets that require further analysis. To see the latest changes, select "Files" and view the README text displayed at the bottom of that pane. IMPORTANT: Major changes are contained in the current SVN source. If you have time please try to use it or the xlslib-package-2.4.0b1.zip archive, and enter bug reports on any problems! Changes: - library specific strings now in their own namespace - iOS Objective-C library - most project files updated (MSVS etc) - C bridge now supports formulas Note: there is a related SF project, libxls, to read Excel files. -
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Priority Estimation Tool (AHP)
PriEsT is a decision making tool for Analytic Hierarchy Process (AHP).
Priorty Estimation Tool (PriEsT) is a decision analysis tool. You can use it for ranking the options you have, or alternatively, you may use it for resource allocation (budgeting) problems. In PriEsT, you enter a list of available options and then define your criteria for prioritization. After defining criteria, PriEsT allows you to enter your judgements against each criterion, which are then used to calculate the final ranking (or weights). Please cite this if you find it useful:- Siraj, S., Mikhailov, L. and Keane, J. A. (2015), "PriEsT: an interactive decision support tool to estimate priorities from pairwise comparison judgments". International Transactions in Operational Research. 22: 217–235. doi:10.1111/itor.12054 -
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The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
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Epidat
Statistical data analysis
Programa multiplataforma de libre distribución para el análisis estadístico y epidemiológico de datos. Free distribution cross-platform program for statistical and epidemiological analysis of data. Sitio web: http://www.sergas.es/Saude-publica/EPIDAT Souceforge: https://sourceforge.net/projects/epidat/ Wikipedia: https://es.wikipedia.org/wiki/Epidat -
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Lompad
Metatagging Editor for Learning Object Metadata (IEEE's LOM)
Lompad is a metatagging tool for learning object. It supports the IEEE-lom spec and SCORM, CANCORE and Normetic profiles. The interface is available in French, English and Spanish Consult the project's Web Site for more information. -
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A real-time graph plotter. While your application is computing and logging results to a CSV file using the LiveGraph Writer API, the plotter lets you visualise and monitor the results live - by instantly plotting charts and graphs of the data.
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Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner.
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ProM is the comprehensive, extensible framework for process mining. Process Mining deals with the a-posteriori analysis of (business) processes using enactment logs.
