Open Source Perl Data Management Systems for Linux

The PDL module gives standard perl the ability to COMPACTLY store and SPEEDILY manipulate the large N-dimensional data sets that are the bread and butter of scientific computing.

g2 is an easy to use, portable and powerful 2D graphics library. It provides a comprehensive set of functions for simultaneous generation of graphical output on different types of devices.

CNV-WebStore is an integrated platform to analyse, store, visualise and interpret CopyNumber Variation data. Analysis is supported for Illumina data, all CNV-reports and raw data can be imported after third-party analysis. Contact system admin at http://cnv-webstore.uantwerpen.be for installation scripts

ETL Converter is a migration tool that builds open source ETL projects from existing projects made with proprietary software. The first version converts DataStage projects into Talend Open Studio projects. Other sources/targets will be available later.

CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome views of data but can be used to create images of single chromosomes/linkage groups, contigs, or BACs, or even proteins -- any feature that has a location on a backbone. Handles most standard genetic/genomic coordinate systems. Reads GFF3 data and produces a PNG or SVG image.

Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.

PHP tool to display graphs and stats based on temperature readings stored in MySQL from 1-wire or any source of data. Also supports alarms, mobile access, and logging data from digitemp. Works in any browser.

EdgeExpressDB (eeDB) is a federated data abstraction system designed for integrating, interpreting, and visualizing very large biology datasets. It is designed for scaling beyond Petabytes and 10^13 objects. http://fantom.gsc.riken.jp/4/edgeexpress

Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.

The Financial Data Access Library provides an abstraction of market data sources. It verifies data consistency and provides transformation to different time frame e.g. daily to weely. Includes SQL, CSI, ASCII and online data sources such as Yahoo!

ActiveGEM contains a set of perl/Tk graphical interfaces for the GEMPAK meteorological diagnostics and plotting package. These research-oriented interfaces provide easy access to low-level GEMPAK functions and allow for the maximum possible flexibility.

A graphical microcode simulator with a reconfigurable datapath.

This project aims to develop a cross platform environment for utilisation of various open source and freely available molecular dynamics and bioinformatics tools. Some extra features are included such as protein hydrophobicity and hydrophilicity plots.

N-Browse is a client-server package for interactive visualization of network data with heterogeneous types of links, intended for ease of use and designed using a generic database schema for data integration and visualization.

OmniGene is a set of reausable components that have been packaged into frameworks. These frameworks are used to produce domain specific services for common bioinformatics tasks including: visualization, database access, and pipeline building.

Comprehensive & high performance data distribution &transformation system. Features a simple, user-friendly event driven scripting interface transparently generates & execs highly efficient Perl/C code. Uses:ETL,datawarehousing,statistics,data-cleansing.

Pinout is a perl script which makes it easy to produce nice looking postscript ballout/pinout images for BGA or PGA type integrated circuits (IC), ASIC's, FPGA's, or CPLD's.

SIRS stands for "Smart Indicators for Reflection Support". SIRS is a framework for developing Indicators on top of sensor networks in web-based and ambient environments for data aggregation, information visualization and context adapation.

Status Board is a web based (Apache, mod_perl, HTML::Mason, MySQL) system to store answers to questions and produce reports. It will support data export, compartmentialization of user access and constraints to user input for better data analysis.

Savors is a visualization framework that supports the ingestion of data streams created by arbitrary command pipelines. Any number of data streams can be shown synchronized by time in the same or different views, which can be arranged in any layout. These capabilities combined with a powerful parallelization mechanism and interaction models already familiar to administrators allows Savors to display complex visualizations of data streamed from many different systems with minimal effort.

A generic geospatial analysis and viewing capability using Perl scripts that provides the foundation and structure for readily creating KML data files from disparate data sources. KML files can be read and viewed by Google Earth and other tools.

ValiTerms is a tool that helps the validation of terms in corpus. It finds their occurrences and allows terminologists to choose if a term is relevant or not. ValiTerms is developed at LIPN (http://www-lipn.univ-paris13.fr), RCLN team. Please consult the wiki for instructions about installation and usage.

Vcd2txt is an utility to parse value change dump (VCD) files and convert them to an easily readable (plain-text) table of signals. In contrast to GTKwave, simulation of hardware circuits can be performed fully on the command line.

Interactive Perl environment for data analysis. It consists of several integrated tools such as a Plotting tool, Interactive Shell, and more. Written entirely in Perl using Tk.

System for Web usage mining and data warehouse: it allows the discovery of knowledge from data (KDD) regarding users' usage on the Web (such as unique visitors, sessions, transactions) and organise it in a RDBMS (currently PostgreSQL). Written in C++.