Open Source Bio-Informatics Software

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Bio-Informatics Software

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Browse free open source Bio-Informatics software and projects for Windows and Mac below. Use the toggles on the left to filter open source Bio-Informatics software by OS, license, language, programming language, and project status.

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  • 1
    BANNER is a named entity recognition system intended primarily for biomedical text. It uses conditional random fields as the primary recognition engine and includes a wide survey of the best techniques described in recent literature.
    Downloads: 0 This Week
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  • 2
    Info Sapient will be an Open Source, Common License 0.5, 100% Pure Java based program that is a mechanism for the expression and execution of business rules.
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  • 3
    Life Science Identifier (LSID) resolution protocol, to locate biologically significant data over a network, within middle-ware providing a client A.P.I. for Life Science applications, and server software, for Industry data providers.
    1 Review
    Downloads: 0 This Week
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  • 4
    Life Science Identifier (LSID) Specification is a globally unique identifying scheme for information resources on the life sciences domain. It is based on Internet standards such as DNS, URN, HTTP, RDF, SOAP, WSDL, and web services.
    Downloads: 0 This Week
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  • 5

    PathMEN

    A Java tool for mining pathway mentions from literature

    PathNER is a tool for the identification of specific pathway mentions from biomedical literature. PathNER is built upon the GATE embedded framework.It's based on soft dictionary matching and rules-based detection. The dictionary is generated from ConsensusPathDB and Pathway Ontology and the rules are implemented in JAPE. Using PathNER, you can identify all occurrences of informative pathway names (e.g. 'the Wnt pathway'). PathNER can be used to assist studies that aim at uncovering associations between disease and pathways.
    Downloads: 0 This Week
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  • 6
    An assessmemt tool of sequence repeats for short read sequencing.
    Downloads: 0 This Week
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