Search Results for "hg38.refseq.bed12"
Sort By:
Showing 5 open source projects for "hg38.refseq.bed12"
View related business solutions-
AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
-
Gemini 3 and 200+ AI Models on One PlatformBuild generative AI apps with Vertex AI. Switch between models without switching platforms.
-
1
hg38 version of the pipelines for whole exome sequencing: exome_test38.sh wole transcription sequencing: rna_test38.sh somatic calling: somatic38.sh SV detect: svdetect38.sh, meerkat38.sh cnv: svdetectcnv38.sh, contra38.sh, cnvkit38.sh *** Mutect2 instead of haptotypecaller is used to call variants in DNA-seq.
-
2
miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
3
allmut.sh is a shell script to run MutSigCV and genvisr. ***Update*** The genelist file reports those with p<0.05 only. Now the script incorporates genvisr. hg38 option is added. md (most deleterous) option is added. A script to transform TCGA MAF file is provided.
-
4
...Pls be noted that this method can be applied regardless of sequencing platforms and library construction methods. Most importantly, it is built up based on the human genome reference of GRCh38/hg38.
-
Add Two Lines of Code. Get Full APM.Works out of the box for Rails, Django, Express, Phoenix, and more. Monitoring exceptions and performance in no time.
-
5
Somatic APP analysis
Reanalysis of somatic APP retrotransposition
... [ Basic usage ] • Detection of IEJs connecting APP exons java -jar somaticAPP.jar -D -b input.bam [optional_arguments] * Input data: PRJNA577966 * The input bam should be mapped to APP751.fa (provided in the 'data' folder) and sorted by read name after mapping • Estimation of gencDNA fraction java -jar somaticAPP.jar -F -b input.bam -a BWA_PATH -s SAMTOOLS_PATH [optional_arguments] * Input data: PRJNA493258 * The input bam should be a human-genome-mapped (hg38), coordinate-sorted, and duplicate-marked file. Try -h or -? options to get detailed descriptions for optional input parameters
- Previous
- You're on page 1
- Next
