Search Results for "global alignment"
Sort By:
Showing 22 open source projects for "global alignment"
View related business solutions-
Gemini 3 and 200+ AI Models on One PlatformBuild generative AI apps with Vertex AI. Switch between models without switching platforms.
-
Try Google Cloud Risk-Free With $300 in CreditUse your credit across every product. Compute, storage, AI, analytics. When it runs out, 20+ products stay free. You only pay when you choose to.
-
1
openTSNE
Extensible, parallel implementations of t-SNE
openTSNE is a modular Python implementation of t-Distributed Stochasitc Neighbor Embedding (t-SNE) [1], a popular dimensionality-reduction algorithm for visualizing high-dimensional data sets. openTSNE incorporates the latest improvements to the t-SNE algorithm, including the ability to add new data points to existing embeddings [2], massive speed improvements [3] [4] [5], enabling t-SNE to scale to millions of data points, and various tricks to improve the global alignment of the resulting visualizations. -
2
GLM-4.6
Agentic, Reasoning, and Coding (ARC) foundation models
GLM-4.6 is the latest iteration of Zhipu AI’s foundation model, delivering significant advancements over GLM-4.5. It introduces an extended 200K token context window, enabling more sophisticated long-context reasoning and agentic workflows. The model achieves superior coding performance, excelling in benchmarks and practical coding assistants such as Claude Code, Cline, Roo Code, and Kilo Code. Its reasoning capabilities have been strengthened, including improved tool usage during inference... -
3
HunyuanWorld-Voyager
RGBD video generation model conditioned on camera input
HunyuanWorld-Voyager is a next-generation video diffusion framework developed by Tencent-Hunyuan for generating world-consistent 3D scene videos from a single input image. By leveraging user-defined camera paths, it enables immersive scene exploration and supports controllable video synthesis with high realism. The system jointly produces aligned RGB and depth video sequences, making it directly applicable to 3D reconstruction tasks. At its core, Voyager integrates a world-consistent video... -
4
Subread
High-performance read alignment, quantification and mutation discovery
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in... -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
-
5
MeRead
A RSS reader built with Flutter and designed with Material You
A concise and easy-to-use RSS reader built with Flutter and designed with Material You. -
6
CView
Alignment viewer that incorporates a dynamic graphical network.
> CView wiki: https://sourceforge.net/p/cview/wiki/Home/ Related Software: 1. CStone: https://sourceforge.net/projects/cstone/ 2. CSReadGen: https://sourceforge.net/projects/csreadgen/ 3. CView: (See wiki) 4. ChimSim: https://sourceforge.net/projects/chimsim/ 5. TVScript: https://sourceforge.net/projects/tvscript/ 6. SeQuester: https://sourceforge.net/projects/sequester/ 7. TreeScope: https://sourceforge.net/projects/treescope/ -
7
Covidex
Ultra fast and accurate subtyping tool of viral genomes.
Viral subtypes or clades represent clusters among isolates from the global population of a defined species. Subtypification is relevant for studies on virus epidemiology, evolution and pathogenesis. In this sense, Covidex was developed as an open source alignment-free machine learning subtyping tool. It is a shiny app that allows fast and accurate classification of viral genomes in pre-defined clusters. -
8
XIVO
X Inertial-aided Visual Odometry
...It performs auto-calibration of the relative pose between the camera and the IMU as well as the time-stamp alignment. -
9
LCUI
A small C library for building user interfaces with C, XML and CSS.
LCUI is a freely available software library to create GUI application, it is written in C, support the use XML and CSS describe the graphical interface, you can use it to make some simple effects. The above description and screenshots is for the version 1.0.0 (+), and the 1.0.0 version is still in development, it is not officially released, please do not use old versions of "files "page to download as version 1.0.0. -
Application Monitoring That Won't Slow Your App DownFull APM with errors, performance, logs, and uptime monitoring. 99.999% uptime SLA on the platform itself.
-
10
Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial
RNA-seq analysis is becoming a standard method for global gene expression profiling. However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. -
11
pPGallery
Free Joomla! plugin to create a simple image gallery.
** minor bug fix to work with J! 3.6.x, current version: 4.316x ** /03.Aug.16 Free Joomla! content-plugin to create a simple image gallery based on 'prettyPhoto' display engine (a jQuery lightbox clone: http://www.no-margin-for-errors.com/projects/prettyPhoto-jquery-lightbox-clone). Images from folders or directly inserted into the content/article can be processed with automatic thumbnail generation. For tutorials and more detailed information refer to the Wiki: ... -
12
ncmock
NetCDF mock data generator.
...Variables can be any type and filled with data in 5 ways, either a constant, a checker pattern, randoms, linear range, or a sombrero ripple function, all of which can be animated too if they use a record dimension. Global and variable attributes can also be created. Esoteric controls exist for choosing alignment, blocksize, file flavor (classic or HDF5), prefill, initial size, and header pad. ncmock has throughput and peak memory calipers, so it can also be used as a benchmark tool -
13
...It uses a dynamic programming algorithm to align each query DNA sequence against a set of target protein sequences, produces frameshift-corrected protein and DNA sequences and an optimal global or local protein alignment. It also helps filter out non-target reads. The online version of FrameBot is available on http://fungene.cme.msu.edu/FunGenePipeline, tutorial http://rdp.cme.msu.edu/tutorials/framebot/RDPtutorial_FRAMEBOT.html. Updates: FrameBot now uses a kmer pre-filtering heuristic for no-metric-search. This pre-filtering may increase the speed by one to two orders of magnitude. ...
-
14
SMR DNA Barcoder is a based on nio-bio by Sergio Anibal de Carvalho Junior for aligning various DNA specimen, based on DNA global and local alignment algorithm and result are displayed in a graphical window.
-
15
NeedlemanWunsch
Fast global sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/ -
16
Swift Sequence Alignment Program
GPU-based DNA sequence alignment program using Smith-Waterman
Swift is a DNA sequence alignment program that produces gapped alignment using the Smith-Waterman algorithm. It takes in a query file (FASTA format) and a reference file (FASTA format) as input. It outputs the reference name, read name, gapped alignment, alignment score, alignment start and end positions, and alignment length. I gave a talk on Swift in the GPU Technology Conference 2012. The talk can be accessed at... -
17
-
18
SmithWaterman
Fast local sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/ -
19
C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.
-
20
Multi-functional batch sequence aligner incorporating Needleman-Wunsch, Smith-Waterman and Oommen-Kashyap algorithms along with compound alignment of secondary sequences.
-
21
This is an global sequence alignment tool (GSA) created using visual basic 6.0. In this software, Needleman & Wunsch algorithm is used.
-
22
A bi-directional BLAST tool for orthologue listing with extended facilities (global alignment; paralogue list; GO onthology; dN/dS; etc) working on Win32 compiled versions of NCBI BLAST,FASTA,EMBOSS, and PAML. FILES AVAILABLE AT THE HOMEPAGE.(JAVA coded)
- Previous
- You're on page 1
- Next
