Search Results for "evolution of simple organisms"
Sort By:
Showing 65 open source projects for "evolution of simple organisms"
View related business solutions-
Gemini 3 and 200+ AI Models on One PlatformBuild generative AI apps with Vertex AI. Switch between models without switching platforms.
-
Try Google Cloud Risk-Free With $300 in CreditUse your credit across every product. Compute, storage, AI, analytics. When it runs out, 20+ products stay free. You only pay when you choose to.
-
1
Thrive
The main repository for the development of the evolution game Thrive
...Thrive will encapsulate the player in the wonders of science and the universe, allowing them to manipulate the virtual world around them with editors to modify technology, culture, organisms, and entire solar systems. Seven stages are planned, Microbe, Multicellular, Aware, Awakening, Society, Industrial and Space, though for the moment we’re only focusing on the first of these. -
2
Aerich
A database migrations tool for TortoiseORM, ready to production
Aerich is a lightweight database migration tool built for Tortoise ORM, an async ORM for Python. It handles schema evolution through versioned migrations, enabling developers to update and rollback database changes with ease. Designed for asyncio-based applications, Aerich is ideal for fast-moving Python projects that need simple migration control without heavy dependencies. -
3
Modoboa
Mail hosting made simple
...Modoboa is developed with modularity in mind, expanding it is really easy. Actually, all current features are extensions. It is written in Python 3 and uses the Django, jQuery and Bootstrap frameworks. Follow the evolution of your server traffic thanks to a few builtin graphics: messages distribution per type and average size. Easily use standard protocols like DKIM or DMARC to improve your sender reputation and so make sure your emails will be delivered. Consult your emails everywhere thanks to simple but functional builtin webmail. -
4
IK Analysis for Elasticsearch
A plugin that integrates Lucene IK analyzer into elasticsearch
...Starting from version 3.0, IK has developed into a common word segmentation component for Java, independent of the Lucene project, and at the same time provides a default optimized implementation of Lucene. In the 2012 version, IK implemented a simple word segmentation ambiguity elimination algorithm, marking the evolution of the IK tokenizer from pure dictionary word segmentation to analog semantic word segmentation. -
Our Free Plans just got better! | Auth0You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
-
5
EKS Best Practices
A best practices guide for day 2 operations
The Amazon EKS Best Practices Guide is a public repository containing comprehensive documentation and guidance for operating production-grade Kubernetes clusters on AWS’s managed service, Amazon EKS. Rather than a code library, it serves as a reference catalogue of patterns, anti-patterns, checklists and architectures across domains such as security, reliability, scalability, networking, cost optimization and hybrid cloud deployments. The repository is maintained by AWS but open to... -
6
ToxTrac
Free Animal Tracking Software
...If used, please cite: Rodriguez, A., Zhang, H., Klaminder, J., Brodin, T., Andersson, P. L. and Andersson, M. (2018). ToxTrac: a fast and robust software for tracking organisms. Methods in Ecology and Evolution. 9(3):460–464 Rodriguez, A., Zhang, H., Klaminder, J., Brodin, T., and Andersson, M. (2017). ToxId: an algorithm to track the identity of multiple animals. Scientific Reports. 7(1):14774. Contact and Support: Alvaro Rodriguez (Main Developer), a.tajes@udc.es Magnus Andersson, magnus.andersson@umu.se -
7
FlyOOBE
FlyOOBE (ex-Flyby11) – Windows Setup Assistant
FlyOOBE is the natural evolution of Flyby11. The classic Flyby11 upgrader still exists and is included inside FlyOOBE, plus it's also available as a separate download if you only want the minimal upgrade tool. Originally, Flyby11 was a simple patcher to remove the restrictions stopping you from installing Windows 11 (24H2) on unsupported hardware. Old PC? -
8
XLibraryDisplay
A sequence analysis tool for protein engineering
XLibraryDisplay is an intuitive sequence analysis program optimized for protein engineering. It is ideal for all directed evolution platforms including phage, ribosome, and yeast display. Analysis can be quickly done on hundreds to thousands of sequences. Best suited for Sanger sequencing. Requirements: Microsoft Windows XP, 7, 8, or 10 and Excel 2007, 2010, 2013, or 2016 Described in Stafford et al JCIM 2014: http://pubs.acs.org/doi/abs/10.1021/ci500362s -
9
DDDplus
A lightweight flexible development framework
DDDplus, originally cp-ddd-framework(cp means Central Platform, lightweight flexible development framework for complex business architecture. A set of lightweight business mid-stage development framework, based on DDD thinking, is committed to the precipitation and inheritance of business assets, comprehensively solves the expansion problem of complex business scenarios, realizes the core elements of mid-stage, and empowers mid-stage construction. Integrating the complex ecological... -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
-
10
OK
Welcome to the future of programming languages
...It eliminates many common language features (e.g., ternary operators) in favour of a consistent, minimal syntax: for example it uses only switch statements for control flow and has only one comparison operator. OK? also treats errors as plain values (strings/arrays) and removes inheritance in favour of what it calls “evolution over composition.” The language emphasises readability and pushing logic out into functions so cases remain simple. It includes concurrency via a map function that executes callbacks in parallel. The project is illustrative of Duffield’s vision: code should feel “magical to write” by removing what is unnecessary. -
11
Biogenesis is an artificial life program that simulates the processes involved in the evolution of organisms. It shows colored segment based organisms that mutate and evolve in a 2D environment. Biogenesis is based on Primordial Life.
-
12
SwiftInfo
Extract and analyze the evolution of an iOS app's code
SwiftInfo is a CLI tool that extracts, tracks, and analyzes metrics that are useful for Swift apps. Besides the default tracking options that are shipped with the tool, you can also customize SwiftInfo to track pretty much anything that can be conveyed in a simple .swift script. By default SwiftInfo will assume you're extracting info from a release build and sending the final results to Slack, but it can be used to extract info from individual pull requests as well with the danger-SwiftInfo... -
13
vim-bootstrap
A simple method of generating a configuration for vim / neovim
Vim Bootstrap makes it easy to learn a new editor, focus on learning how to use it and leave the configuration to us. Is a refactor, and sometimes redactor, in the tradition of Vim (which itself derives from Stevie). It is not a rewrite but a continuation and extension of Vim. Many clones and derivatives exist, some very clever, but none are Vim. Neovim is built for users who want the good parts of Vim, and more. Vim is a highly configurable text editor built to enable efficient text... -
14
American Fuzzy Lop
American fuzzy lop - a security-oriented fuzzer
AFL (American Fuzzy Lop) is a widely used graybox fuzzer that discovers bugs by mutating inputs and steering execution using lightweight instrumentation. Instead of random mutations alone, it uses coverage feedback to evolve input corpora, pushing programs into deeper and more interesting code paths. Its workflow emphasizes quick start: point it at a target binary with compile-time instrumentation (or use QEMU-based mode when recompilation isn’t possible), seed it with a small corpus, and... -
15
GranthamDist
Perl scripts for calculating amino acid sequence divergence
This package contains two perl scripts and corresponding distance matrixes to calculate amino acid sequence divergence among alleles in a pairwise manner or among all alleles of an individual. The scripts were specifically written to calculate divergence between alleles of MHC/HLA immune genes. Written by Tobias Lenz, last updated May 2020. Please cite the following reference when using this script in your research: Pierini & Lenz (2018) Divergent allele advantage at human MHC genes:... -
16
A Machine Learning Course with Python
A course about machine learning with Python
The purpose of this project is to provide a comprehensive and yet simple course in Machine Learning using Python. Machine Learning, as a tool for Artificial Intelligence, is one of the most widely adopted scientific fields. A considerable amount of literature has been published on Machine Learning. The purpose of this project is to provide the most important aspects of Machine Learning by presenting a series of simple and yet comprehensive tutorials using Python. -
17
PPIXpress
specific protein interaction networks from transcript expression
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing. ... -
18
...A userfriendly graphical front-end for phylogenetic analyses using RAxML (Stamatakis, 2006). Please cite: Silvestro, Michalak (2012) - raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12, 335-337. DOI: 10.1007/s13127-011-0056-0
-
19
A library of C codes for computing Galactic Chemical Evolution in the instantaneous recycling approximation based on D. D. Clayton's analytic models.
-
20
JSON2YOLO
Convert JSON annotations into YOLO format.
Explore our state-of-the-art AI architecture to train and deploy your highly accurate AI models like a pro. This directory contains label import/export software developed by Ultralytics LLC, and is freely available for redistribution under the GPL-3.0 license. Ultralytics is a U.S.-based particle physics and AI startup with over 6 years of expertise supporting government, academic, and business clients. We offer a wide range of vision AI services, spanning from simple expert advice up to the... -
21
Commander
Commander.exe is speech recognition engine for Polaris.
...Through use of this plugin in Eclipse IDE you can see that not only is it possible to provide an environment for a programing with voice, but that programing with voice it is part of the natural evolution of programming tools. Current version supports simple but powerful commands such as openig search forms, changing workspace, copy and paste code. Efforts on daily basis are made to increase the range of functionality that can be controlled with voice. Commander is here to recognize speech and send it to Polaris who activates actions in Eclipse IDE -
22
CUCAA tool
Codon Usage Co-Adaptation Analysis Tool "CUCAA Tool"
Tools are available to analysis the codon usage, but there are no tools available focusing on analyzing the codon usage co-adaptation between viruses and their hosts. Therefore, Codon Usage Co-Adaptation Analysis Tool "CUCAA Tool" were developed by python 3.7. The tool can calculate various codon usage bias measurements as effective number of codons, codon adaptation index, relative codon deoptimization index, similarity index, as well as a simple cluster machine learning approach to see if... -
23
OpenDino
Open Source Java platform for Optimization, DoE, and Learning.
...It provides a graphical user interface (GUI) and a platform which simplifies integration of new algorithms as "Modules". Implemented Modules Evolutionary Algorithms: - CMA-ES - (1+1)-ES - Differential Evolution Deterministic optimization algorithm: - SIMPLEX Learning: - a simple Artificial Neural Net Optimization problems: - test functions - interface for executing other programs (solvers) - parallel execution of problems - distributed execution of problems via socket connection between computers Others: - data storage - data analyser and viewer -
24
Git Time Machine
Atom package that allows you to travel back in commit history
git-time-machine is a user interface (often as an editor plugin or UI extension) that allows users to browse a file’s history visually, stepping back and forth through revisions in Git like a “time machine.” It shows changes to a file over time, lets users compare older states, and often provides diff and blame views to understand how the file evolved. Instead of just opening a commit log or diff, git-time-machine gives an interactive, incremental experience where you can slide through... -
25
TAL evolution scripts
Scripts to assess TAL effector diversity and find evolutionary pattern
TAL effectors (aka TALEs) are repeat containing proteins found in the genus of phytopathogenic bacteria Xanthomonas. They are able to bind DNA through their repeat region and induce genes in the host plant. Thus variation in repeat number and order can lead to diversification of virulence functions and evasion of recognition by the host. Variation in TAL effector repeats and repeat sequence between different taxonomic groups has remained largely unexplored. In this study we describe the...
