Search Results for "citation"
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Showing 140 open source projects for "citation"
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Better BibTeX for Zotero
Make Zotero effective for us LaTeX holdouts
Better BibTeX (BBT) is a plugin for Zotero and Juris-M that makes it easier to manage bibliographic data, especially for people authoring documents using text-based toolchains (e.g. based on LaTeX / Markdown). Zotero does all its work in UTF-8 Unicode, which is absolutely the right thing to do. Unfortunately, for those shackled to BibTeX and who cannot (yet) move to BibLaTeX, unicode is a major PITA. Also, Zotero supports some simple HTML markup in your items that Bib(La)TeX won’t... -
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adstex
Automated generation of NASA ADS bibtex entries directly from citation
adstex automatically identifies all citation keys (e.g., identifiers, author+year) in your TeX source files and uses NASA's Astrophysics Data System (ADS) to generate corresponding bibtex entries. Write your papers without worrying about the bibtex entries. Simply put down arXiv IDs, ADS bibcodes, DOIs, or first author & year citation keys in your \cite commands, and then use adstex to automatically generate the bibtex file for you. -
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GPT Academic
Research-oriented chatbot framework
GPT Academic is a research-oriented chatbot framework designed to integrate large language models (LLMs) into academic workflows. It provides tools for structured document processing, citation management, and enhanced interaction with research papers. -
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PaSa
An advanced paper search agent powered by large language models
...Instead of simply translating a query into keywords and returning a flat list of matching papers, PaSa uses a dual-agent architecture (Crawler + Selector) that can iteratively search, read, analyze, and filter academic publications — simulating how a researcher might dig through citation networks, expand references, and evaluate relevance based on both metadata and content. Given a complex scholarly question (for example, “Which works focus on non-stationary reinforcement learning with UCB-based value methods?”), PaSa decomposes the task: the Crawler generates search queries, retrieves candidate papers (via search tools and citation expansion), then adds them to a “paper queue.” ... -
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PaperQA2
High accuracy RAG for answering questions from scientific documents
...See our recent 2024 paper to see examples of PaperQA2's superhuman performance in scientific tasks like question answering, summarization, and contradiction detection. In this example we take a folder of research paper PDFs, magically get their metadata - including citation counts and a retraction check, then parse and cache PDFs into a full-text search index, and finally answer the user question with an LLM agent. -
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Auto-Deep-Research
Your Fully-Automated Personal AI Assistant
...Users provide a research topic or multifaceted goal, and the system autonomously breaks the objective down into subtasks like literature collection, critical summarization, cross-comparison, citation extraction, metric evaluation, and structured writing. Auto-Deep-Research integrates retrieval from academic and web sources, processes document corpora for relevance and key insights, and organizes outputs into coherent chapters or sections according to research standards. It also embeds validation loops, where intermediate drafts are self-checked for consistency, coverage, and alignment with sound reasoning practices, reducing reliance on raw generation alone. -
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GROBID
A machine learning software for extracting information
...References extraction and parsing from articles in PDF format, around .87 F1-score against on an independent PubMed Central set of 1943 PDF containing 90,125 references, and around .89 on a similar bioRxiv set of 2000 PDF (using the Deep Learning citation model). All the usual publication metadata are covered (including DOI, PMID, etc.). -
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AutoResearchClaw
Autonomous research from idea to paper. Chat an Idea. Get a Paper 🦞
AutoResearchClaw is an open-source framework designed to automatically generate full academic research papers from a single idea or topic. Built in Python, it orchestrates a multi-stage research pipeline that gathers literature, formulates hypotheses, runs experiments, analyzes results, and writes the final paper. The system retrieves real academic references from sources such as arXiv and Semantic Scholar to ensure credible citations. It can automatically generate code for experiments, run... -
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PaperAI
Semantic search and workflows for medical/scientific papers
PaperAI is an open-source framework for searching and analyzing scientific papers, particularly useful for researchers looking to extract insights from large-scale document collections. -
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Feynman
The open source AI research agent
Feynman is a command-line AI research agent designed to automate complex research workflows by orchestrating multiple specialized agents that collaborate to gather, analyze, and synthesize information into structured outputs. It operates as a “Claude Code for research,” allowing users to input natural language queries and receive fully developed, source-grounded research briefs, literature reviews, or experimental analyses. The system is built around a multi-agent architecture that includes... -
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SurfSense
Connect any LLM to your internal knowledge sources
...Team collaboration is a core focus, with real-time shared chats, role-based access control, and comment threads enabling organized workflows. The platform also supports advanced retrieval augmented generation (RAG) capabilities, enabling powerful search and citation features that help answer questions with contextually relevant data. -
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JabRef Bibliography Management
Graphical Java application for managing BibTeX and biblatex
JabRef is an open-source, cross-platform citation and reference management tool. Stay on top of your literature: JabRef helps you to collect and organize sources, find the paper you need and discover the latest research. JabRef is available free of charge and is actively developed. It supports you in every step of your research work. -
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Zotero
Tool to help you collect, organize, annotate, cite, and share research
Zotero is a powerful, free, open-source research management application designed to help students, academics, and professionals collect, organize, annotate, cite, and share research sources and materials for papers, projects, or books. It can save web pages, PDFs, books, articles, and more with metadata, automatically extract bibliographic information, and organize items into collections and tag systems, while supporting notes and annotations directly alongside references. Zotero’s interface... -
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Langroid
Harness LLMs with Multi-Agent Programming
Given the remarkable abilities of recent Large Language Models (LLMs), there is an unprecedented opportunity to build intelligent applications powered by this transformative technology. The top question for any enterprise is: how best to harness the power of LLMs for complex applications? For technical and practical reasons, building LLM-powered applications is not as simple as throwing a task at an LLM system and expecting it to do it. Effectively leveraging LLMs at scale requires a... -
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Eko
Build Production-ready Agentic Workflow with Natural Language
Eko (Eko Keeps Operating) is a JavaScript framework designed for building production-ready agent-based workflows using natural language commands. It allows developers to create automated agents that can handle complex workflows in both computer and browser environments. With a focus on high development efficiency, Eko simplifies the creation of multi-step workflows, enabling users to integrate and automate tasks across platforms. It provides a unified interface for managing agents, offering... -
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Primitive UI
A front-end design toolkit for developing web apps
...Headings all have the same line height and margins, and only the font size is individually defined. The blockquote is set to have a left border, with the browser default padding removed. A citation will be right-aligned and italicized. -
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hithesis
LaTeX thesis template package for Harbin Institute of Technology
...It provides class files and examples that handle title pages, abstracts in multiple languages, acknowledgments, lists of figures/tables, symbols, and properly styled chaptering. The template includes bibliography settings and citation styles that conform to school rules, along with ready-made environments for formulas, algorithms, and code. It supports Chinese and English typesetting, sensible defaults for fonts, and modern engines like XeLaTeX for robust CJK support. Cross-references, numbering, and page layout are automated, reducing the risk of last-minute formatting errors before submission. ... -
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Pro-statTarget is Portable Version and standalone software, provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics. Author: Hemi Luan Maintainer: Hemi Luan Citation (from within R, enter citation("statTarget")): Luan H, Ji F, Chen Y, Cai Z (2018). “statTarget: a streamlined tool for signal drift correction and interpretations of quantitative mass spectrometry-based omics data.” Analytica Chimica Acta, 1036, 66-72.
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Rapid Reference
An extension that allows for hassle-free website citation/referencing.
...Start a session in the panel of the extension 2. Do required research/website navigation 3. You can check the preview of the cited references in the panel 4. You can copy the citation list to the clipboard through simply clicking the "Copy Citation" button 5. You're Done! Thanks for using my software 😊 -
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CiteSpace
A widely used tool for visual exploration of scientific literature.
Visit the new site: https://citespace.podia.com CiteSpace generates interactive visualizations of structural and temporal patterns and trends of a scientific field. It facilitates a systematic review of a knowledge domain through an in-depth visual analytic process. It can process citation data from popular sources such as the Web of Science, Scopus, Dimensions, and the Lens. CiteSpace also supports basic visual analytic functions for datasets without citation-related information, for example, PubMed, CNKI, ProQuest Dissertations and Theses. CiteSpace reveals how a field of research has evolved, what intellectual turning points are evident along a critical path, and what topics have attracted attention. ... -
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LocalBiz Schema Generator
Generate schema.org JSON-LD and formatted citations for local business
A lightweight Python utility for generating structured data (JSON-LD schema.org markup) and formatted citations for local businesses. Helps developers implement LocalBusiness schema for SEO and citation consistency. Features: - Generate schema.org LocalBusiness JSON-LD - Format NAP (Name, Address, Phone) data consistently - Output examples for various business types -
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Biber is a sophisticated bibliography processing backend for the LaTeX biblatex package. It supports a unsurpassed feature set for automated conformance to complex bibliography style requirements such as labelling, sorting and name handling. It has comprehensive Unicode support.
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WIKINDX
Virtual Research Environment / On-line Bibliography Manager
...Designed by academics for academics, under continuous development since 2003, and used by both individuals and major research institutions worldwide, WIKINDX is a Virtual Research Environment (an enhanced on-line bibliography manager) storing searchable references, notes, files, citations, ideas, and more. An integrated WYSIWYG word processor exports formatted articles to RTF and HTML. Plugins include a citation style editor and import/export of bibliographies (BibTeX, Endnote, RIS etc.). WIKINDX supports multiple attachments with each reference, multiple language localizations, and uses a template system to allow users to visually integrate WIKINDX into their sites. WIKINDX runs on a web server giving you and your research group ownership and global access from any web-enabled device. ... -
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Airborne Data Processing and Analysis
Software to processing and analyze of airborne measurements.
The Airborne Data Processing and Analysis (ADPAA) package is an open-source software package containing a collection of programs and scripts to process and analyze data from in-situ instruments deployed on airborne platforms. The ADPAA package was started to process data on the North Dakota Citation Research Aircraft but has been used to process data on many airborne platforms. The software methodology used in ADPAA is provided in the peer-review publication: Delene, D. J., Airborne Data Processing and Analysis Software Package, Earth Science Informatics, 4(1), 29-44, 2011, URL: http://dx.doi.org/10.1007/s12145-010-0061-4, DOI: 10.1007/s12145-010-0061-4. -
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...IBEIP uses a hierarchical iterative merging model to merge highly overlapping epitopes and identify the hot nAb binding region as the B cell dominant epitope region. IBEIP is also applicable to analyzing high-mutant antigens and complex epitope structures that span adjacent monomers. Citation: Yun-Fei Ma, Ye Liu. Intelligent Batch Epitope Identification and Partitioning: an intelligent tool for the identification of B cell dominant epitopes. Brief. Bioinform. 2025, 26(4):bbaf310.
