SASHIMI

The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

Features

Database Search Engines (comet etc.)
SpecraST (Spectrum Library Search Engine)
Open-mass Search (Magnum etc.)
Kojak (Crosslinking Search)
DDA Analysis
DISCo (DIA Analysis)
reSpect (Chimeric Spectrum Analysis)
MS1 and MS2 Quantitation Labelled and Unlabelled
Decoy Database Generation
PeptideProphet (PSM Level Validation)
iProphet (Peptide Level Validation)
PTMProphet (Post-Translational Modification Validation)
Protein Level Validation
Spectrum Library Generation
Data Visualization Tools
Retention Time Cataloging and Prediction

Project Samples

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2), GNU Library or Lesser General Public License version 2.0 (LGPLv2)

Follow SASHIMI

SASHIMI Web Site

Other Useful Business Software

Simple, Secure Domain Registration

Get your domain at wholesale price. Cloudflare offers simple, secure registration with no markups, plus free DNS, CDN, and SSL integration.

Register or renew your domain and pay only what we pay. No markups, hidden fees, or surprise add-ons. Choose from over 400 TLDs (.com, .ai, .dev). Every domain is integrated with Cloudflare's industry-leading DNS, CDN, and free SSL to make your site faster and more secure. Simple, secure, at-cost domain registration.

Additional Project Details

Operating Systems

BSD, Linux, Mac, Windows

Languages

English

Intended Audience

Science/Research

User Interface

Command-line, Web-based

Programming Language

C, C++, Java, JavaScript, Perl, Python

Related Categories

Python Molecular Science Software, Python Chemistry Software, Python Bio-Informatics Software, Perl Molecular Science Software, Perl Chemistry Software, Perl Bio-Informatics Software, C++ Molecular Science Software, C++ Chemistry Software, C++ Bio-Informatics Software, C Molecular Science Software, C Chemistry Software, C Bio-Informatics Software, JavaScript Molecular Science Software, JavaScript Chemistry Software, JavaScript Bio-Informatics Software

Registered

2002-12-13

Similar Business Software

Malcom

Geochemistry can be applied to all phases of a field life cycle: exploration, appraisal, development, production, and abandonment. Malcom interactive fluid characterization software offers geochemical engineering solutions by processing gas chromatography data (GC-FID, GC-MS, GC-MS-MS, GC-2D,...

See Software
Evocon

Trusted by manufacturers worldwide, Evocon is a simple and easy-to-use OEE software that helps manufacturing companies improve their production efficiency and reduce waste. The system enables automated data collection, real-time data visualization, downtime tracking, bottleneck identification,...

See Software
Pylon

Create accurate proposals from anywhere in under 2 minutes using hi-res imagery, energy analysis and 3D shading tools in Pylon's intuitive design studio. Pylon is the only solar design software to give you high-resolution imagery in-app with no monthly fees. Identify dates of concern and track...

See Software
Altium Develop

Altium Develop is a multidisciplinary product creation platform that breaks down silos and empowers teams to design collaboratively without limits. Built on Altium Designer and Altium 365, it unifies electrical, mechanical, software, sourcing, and manufacturing teams in a shared environment....

See Software
Dronedesk

Are you wasting hours on drone flight planning? Still using spreadsheets, doc templates, and paper checklists? If so, it's time to switch to Dronedesk, the web-based drone operations management application that makes planning safe drone flights super-efficient. Dronedesk does all the...

See Software
SDS Manager

SDS Manager is a leading provider of Safety Data Sheet (SDS) management systems, offering one of the largest SDS databases with over 14 million documents available in 25 languages. With SDS Manager, employees can easily access Safety Data Sheets directly from their mobile devices by scanning...

See Software