Hamstr

HaMStR has moved to https://github.com/bionf/hamstr where it is now part of the HaMStR-OneSeq package.

HaMStR is a profile hidden Markov model based tool for a directed ortholog search in EST or protein sequence data. The program takes a pre-defined core group of orthologous sequences (core orthologs) and a set of sequences from a search taxon as input. HaMStR then combines in a two-step strategy a pHMM based search and a reverse search via BLAST to extend the core ortholog group with novel sequences from the search taxon.

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Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2013-12-30

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